PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02955.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 401aa MW: 47259.5 Da PI: 6.7634

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02955.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.9	1.2e-27	96	181	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+l L+e+r++++ +++++++k+plW+evs+ m +e g++r+ k+C+ek+enl k+ykk+keg+ +r ++ ++++yf+ql Sme2.5_02955.1_g00004.1 96 RWPRQETLILLEVRSQLDFKFKEANQKGPLWDEVSRIMsEEYGYQRNGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRYFRQL 179 8***********************************8889************************98..55667***** PP trihelix 86 ea 87 ea Sme2.5_02955.1_g00004.1 180 EA 181 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.876	95	154	IPR017877	Myb-like domain
CDD	cd12203	4.40E-18	96	161	No hit	No description
Pfam	PF13837	9.1E-19	96	182	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MEDHEYGMMD LTQYLNGRPL FASVTPHLTP DYQQLDMVIA SNSNSNTINL PQQHYCLPHH 60 QYQHQHHGFL PDANTVIADT TTRALEIEGV GGGNGRWPRQ ETLILLEVRS QLDFKFKEAN 120 QKGPLWDEVS RIMSEEYGYQ RNGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRYFRQLE 180 ALYGKTSNTI NTNTFHHYNQ EAHDHGPKLS DSLYDSSDSD NTNSSDDEND YSKEKRRSKR 240 RGKRSWKGKI IEFMDQQMGK LVEKQEIWLE KMMKTIEDKE QERILREEEW RKKEAIRIEK 300 EQKFWANERA WIEARDAALI HALHKLNGEE EVMKSNTTSY NLNDQNASMF YCNKKQKEMN 360 SLSTSCYYNF QIKNDDEGRI SYCETSTHVP NGHETIDDGL F

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MEDHEYGMMD LTQYLNGRPL FASVTPHLTP DYQQLDMVIA SNSNSNTINL PQQHYCLPHH  60
QYQHQHHGFL PDANTVIADT TTRALEIEGV GGGNGRWPRQ ETLILLEVRS QLDFKFKEAN  120
QKGPLWDEVS RIMSEEYGYQ RNGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRYFRQLE  180
ALYGKTSNTI NTNTFHHYNQ EAHDHGPKLS DSLYDSSDSD NTNSSDDEND YSKEKRRSKR  240
RGKRSWKGKI IEFMDQQMGK LVEKQEIWLE KMMKTIEDKE QERILREEEW RKKEAIRIEK  300
EQKFWANERA WIEARDAALI HALHKLNGEE EVMKSNTTSY NLNDQNASMF YCNKKQKEMN  360
SLSTSCYYNF QIKNDDEGRI SYCETSTHVP NGHETIDDGL F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	243	RRSKRRGKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543475.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	2e-89	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2G3BGE2	0.0	A0A2G3BGE2_CAPCH; Trihelix transcription factor PTL
STRING	PGSC0003DMT400072404	1e-169	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	6e-81	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]