PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02956.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 447aa MW: 48349.2 Da PI: 7.7094

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02956.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	8.9e-16	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E++++++a k++G Wk+I +++ ++t+ q++s+ qk+ Sme2.5_02956.1_g00004.1 60 RERWTEDEHKKFLEALKLYGRA-WKRIEEHVS-TKTAVQIRSHAQKF 104 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.39E-16	54	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.181	55	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-9	57	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-17	58	107	IPR006447	Myb domain, plants
SMART	SM00717	4.1E-12	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-13	60	103	IPR001005	SANT/Myb domain
CDD	cd00167	1.65E-9	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MTDQDPSGES GEGSIPSGTN QISSDVGVSS TRSIKLKEQG ASADVYAPKV RKPYTITKQR 60 ERWTEDEHKK FLEALKLYGR AWKRIEEHVS TKTAVQIRSH AQKFFSKVVR ESNPGDANSV 120 KPIEIPPPRP KRKPLHSYPR KLATPVKSGT PVPEKLTRSL SPNMSMSELE NQSPTSVLSV 180 HGSDALGMVD SSKHVGSASA VSSAGGENSG GFILSDPPNS ILEDGSLPAQ ANATTTPENQ 240 ACVKLELFPQ EDDFVQEGSV ETSSTQCLKL FGKTVLFTES QKPSCPTPGT CTIERDVNDE 300 TSLLAVSWNV TPTKYSAPDS ECSSSTLTLG TPLPFFILPS QNENQWPTGC ASSTLLPWGS 360 SCAVSAEAGR DKNMDVKAQS SRHPLEKVGK ELPSIRPRET PSLVQRASAT KRNKGFVPYK 420 RCLAESGINS SMLSGEEREE QRTGLCL

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MTDQDPSGES GEGSIPSGTN QISSDVGVSS TRSIKLKEQG ASADVYAPKV RKPYTITKQR  60
ERWTEDEHKK FLEALKLYGR AWKRIEEHVS TKTAVQIRSH AQKFFSKVVR ESNPGDANSV  120
KPIEIPPPRP KRKPLHSYPR KLATPVKSGT PVPEKLTRSL SPNMSMSELE NQSPTSVLSV  180
HGSDALGMVD SSKHVGSASA VSSAGGENSG GFILSDPPNS ILEDGSLPAQ ANATTTPENQ  240
ACVKLELFPQ EDDFVQEGSV ETSSTQCLKL FGKTVLFTES QKPSCPTPGT CTIERDVNDE  300
TSLLAVSWNV TPTKYSAPDS ECSSSTLTLG TPLPFFILPS QNENQWPTGC ASSTLLPWGS  360
SCAVSAEAGR DKNMDVKAQS SRHPLEKVGK ELPSIRPRET PSLVQRASAT KRNKGFVPYK  420
RCLAESGINS SMLSGEEREE QRTGLCL

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613640.1	0.0	PREDICTED: protein REVEILLE 1-like isoform X1
Swissprot	F4KGY6	4e-60	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A2G3A9B2	0.0	A0A2G3A9B2_CAPAN; Protein REVEILLE 2
STRING	XP_009613640.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3185	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-56	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]