PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02969.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 163aa MW: 18731.5 Da PI: 9.8252

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02969.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.1	1.9e-14	57	147	7	84
.-HHHHT.T-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 7 psdvlks.grlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 +sdv+++ +r+ +p++ + + +g+++++ +++++d++g+s +++++ +k+ +r v+ +GW++ v+an+L+ gD+ Sme2.5_02969.1_g00001.1 57 NSDVNANlSRFLFPNEWCIKLldymstpekekiQGQNATGLDVSVMDKNGKSHDMNFTRWKSLQRLVFNRGWNKLVEANHLQKGDI 142 57777766899999999999999999999999977888999********************************************* PP EEEEE CS B3 80 vvFkl 84 v + + Sme2.5_02969.1_g00001.1 143 VHLWH 147 98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.73E-17	50	157	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.8E-16	50	157	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.79E-16	57	156	No hit	No description
Pfam	PF02362	6.1E-12	58	147	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.516	99	163	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MLFGKRIFPY AGLNSNNNQQ QPPPYNGLNL PPPNMYLAIL FAQGSQPVYI GSKYVENSDV 60 NANLSRFLFP NEWCIKLLDY MSTPEKEKIQ GQNATGLDVS VMDKNGKSHD MNFTRWKSLQ 120 RLVFNRGWNK LVEANHLQKG DIVHLWHFRT PNTPCFAMNI IKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339802.1	4e-62	PREDICTED: B3 domain-containing protein At2g31720-like
TrEMBL	M0ZGI2	8e-61	M0ZGI2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400000316	1e-61	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11679	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	3e-11	RAV family protein