PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02974.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 185aa    MW: 20655.9 Da    PI: 9.8224
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02974.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260964e-307106199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 
                              +CaaCk++r+ C ++C+la+yfp+++ ++f+ v +lF++sn++k+l+++ ++e + ++++sl+ e ++r ++Pv+G+v+v +kl+ 
  Sme2.5_02974.1_g00002.1   7 KCAACKYQRKPCDENCPLAQYFPSNKVEEFKKVIRLFRVSNIIKMLNSVADNEkKAKMAASLITETKIRYENPVHGCVAVEKKLRL 92 
                              5***********************************************96555389999*************************** PP

                   DUF260  86 qleqlkaelallke 99 
                              ++e++++el+ +++
  Sme2.5_02974.1_g00002.1  93 EIEEVEKELDFVQK 106
                              *********99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.4586108IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-307105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDGPRAKCAA CKYQRKPCDE NCPLAQYFPS NKVEEFKKVI RLFRVSNIIK MLNSVADNEK  60
KAKMAASLIT ETKIRYENPV HGCVAVEKKL RLEIEEVEKE LDFVQKRNAY YKAIHERSSP  120
NKIDPLAKLS QASRTDDIGT SHASTNEDLP YPMVVRISGT KGSLQKGLKS LLKGEPSSLG  180
SLGAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-1731027105LOB family transfactor Ramosa2.1
5ly0_B5e-1731027105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366363.11e-59PREDICTED: LOB domain-containing protein 24-like
TrEMBLM1DS571e-50M1DS57_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000935322e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-23LOB domain-containing protein 27