PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02985.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 143aa    MW: 16341.4 Da    PI: 4.9044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02985.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.52.6e-111312151
                             HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                             +KK  ELSvLCd++++ ii+  +g + ++++
  Sme2.5_02985.1_g00002.1  1 MKKTMELSVLCDVKACTIIVDADGSVETWPK 31
                             8****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.62E-10152IPR002100Transcription factor, MADS-box
PfamPF003197.2E-7129IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKKTMELSVL CDVKACTIIV DADGSVETWP KNPSDLNSIL DQYRKRNSRK KQSDNVVVAA  60
EDNPQDVLSK LNSKIEAVEK RIEFLKRKSI TDGCGKEKNS LKKREFHWDG EIELSDNCFA  120
AANNVEEPCP EGYFWDFETG YFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238550.15e-34PREDICTED: uncharacterized protein LOC109218635
TrEMBLA0A1J6K9J01e-32A0A1J6K9J0_NICAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26880.12e-07AGAMOUS-like 26