PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02990.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 281aa MW: 30657.4 Da PI: 9.3403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02990.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.3e-05	172	210	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Sme2.5_02990.1_g00001.1 172 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 210 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.439	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-11	170	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.62E-6	170	214	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-9	174	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MLKTPSSIEE EREMSDMNAK LLLGTISNTG LHLYPNDNNS NNNLLYSSNT SSISTNRGRF 60 SQIYPTINVS NLNINQPNSC SSLDMNLQPL DLINSTRYGG SFSQTYGLTN HFQHSSSESP 120 VNSSTSTISV FSNVMPEAKR TSNTLETNKG PQNAPKKSRV ESRASCPPFK VRKEKLGDRI 180 AALQQLVAPF GKTDTASVLM EAIGYIKFLQ NQVETLSVPY MKSSRSKASR SLHGGGVEMS 240 SEEMKRDLRS RGLCLVPLTC LTYVTDGGGG VWPPPNFTGG T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-122	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016568517.1	1e-158	PREDICTED: transcription factor bHLH110
Swissprot	Q9SFZ3	8e-61	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A2G2ZT93	1e-160	A0A2G2ZT93_CAPAN; Transcription factor
STRING	PGSC0003DMT400009603	1e-151	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	7e-60	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]