PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03000.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 230aa MW: 25470.1 Da PI: 7.6748

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03000.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.3	2.2e-37	7	100	1	93
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkCa+dC++apyf+++q p++fa++hk+FGasnv+kll ++p +r +a+ ++ yeA+ar++dPvyG+v++i++lqq Sme2.5_03000.1_g00004.1 7 PCGACKFLRRKCAADCIFAPYFCSDQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVGTIGYEAQARIKDPVYGCVAHIFTLQQ 92 7***********************99****************************************************** PP DUF260 86 qleqlkae 93 ql +l++ Sme2.5_03000.1_g00004.1 93 QLWNLEER 100 999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.949	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-36	7	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MTSSSSPCGA CKFLRRKCAA DCIFAPYFCS DQGPARFAAI HKVFGASNVS KLLLHVPVPD 60 RCEAVGTIGY EAQARIKDPV YGCVAHIFTL QQQLWNLEER PATTICIPVG PKSFSSVARD 120 EADIEVTLAT QSISKRENFK YLGSSIQSND NIDDDVTHHI GAAWTKWMLA SGILYDKKIP 180 PKLTGKFYRM VVRRLCYMGW SFGQSKTHCA EDAGRGDEDI EIDVWTHQGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-32	4	99	8	102	LOB family transfactor Ramosa2.1
5ly0_B	2e-32	4	99	8	102	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	7e-53	lateral organ boundaries-domain 16