PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03006.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 192aa    MW: 22368.2 Da    PI: 6.5128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03006.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.61.6e-2541138198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k+ltpsdv++++ lv+p+k+a+e+ ++ +++ +++++d+s+  W++++ y+k+s+++++t+GW +Fvk  gLk +D+vvF l +
  Sme2.5_03006.1_g00003.1  41 FQKELTPSDVGNNR-LVIPRKYATEYFSQIQQKEEVSFYDTSNTLWKFRFFYCKSSQKCTFTRGWPKFVKHEGLKPKDVVVFNLCE 125
                              99*********985.***********666667789************************************************997 PP

                              S.SEE..EEEEE- CS
                       B3  87 r.sefelvvkvfr 98 
                              + ++  +v+ v++
  Sme2.5_03006.1_g00003.1 126 SkNCNAFVIDVVK 138
                              7677777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-2239133IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2439135IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-1839123No hitNo description
PROSITE profilePS5086312.81640140IPR003340B3 DNA binding domain
PfamPF023621.0E-2241137IPR003340B3 DNA binding domain
SMARTSM010192.4E-1241140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEDKRNEEKD GISDSRFKGV VSEHSVHFVE DDGEFLYKKL FQKELTPSDV GNNRLVIPRK  60
YATEYFSQIQ QKEEVSFYDT SNTLWKFRFF YCKSSQKCTF TRGWPKFVKH EGLKPKDVVV  120
FNLCESKNCN AFVIDVVKKV EVLPMNHHQQ EEMRAQPIDN HGENEDDEDA LTPILLFGKQ  180
IGCSKTKKEN GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-164013313112DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350629.13e-59PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P52e-23RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1U8EP902e-55A0A1U8EP90_CAPAN; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGSolyc03g083110.1.11e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1637544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-26RAV family protein