PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03023.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 191aa    MW: 21013.3 Da    PI: 3.8652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03023.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.52.6e-0838643359
                             --EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY 33 pvkkkversaedpkvveitYegeHnhe 59
                             p kk+ver+++d ++++itY+++Hnh+
  Sme2.5_03023.1_g00004.1 38 PLKKQVERCSKDASLFIITYTSSHNHP 64
                             679***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081110.3951666IPR003657WRKY domain
SMARTSM007740.00932765IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-83766IPR003657WRKY domain
PfamPF031061.4E-43864IPR003657WRKY domain
SuperFamilySSF1182901.44E-53866IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKGLLQIVGL GENMDRNPLK DPLIPGVITD AAVQRVAPLK KQVERCSKDA SLFIITYTSS  60
HNHPDPNLPN NVTQEPIVDQ HVSLKDNDDD DDDDNDDPQS CKSPLSSTAT TTSSSISQGI  120
LEENLLTDNF LGTISCDDFL PLSYPQLMKF PKSELSEEND FYDELGELEL PPSSTPFAGI  180
FEEAILVDPY S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-175HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055738.14e-77probable WRKY transcription factor 65 isoform X1
TrEMBLM1AI268e-74M1AI26_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000232721e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112812025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.19e-07WRKY family protein