PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03092.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 415aa MW: 46236.1 Da PI: 6.7349

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03092.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.5	9.8e-32	96	200	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F Sme2.5_03092.1_g00004.1 96 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSF 181 89*************************966778999********************************************** PP EE-.SS.SEE..EEEEE-S CS B3 83 kld.gr.sefelvvkvfrk 99 ++ g+ + +l++ ++r+ Sme2.5_03092.1_g00004.1 182 QRGiGElGKDRLFIDWRRR 200 *655999999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.7E-42	87	203	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-29	93	198	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.14E-27	94	183	No hit	No description
SMART	SM01019	3.7E-22	96	201	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-29	96	200	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.649	96	201	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MMNFFPGGSG FNDQGSSKGT RPFSSSSSSA SQKILVPFSY QQRSWLSSTT NNGEDSTDLV 60 MMDTRPSANL SEGDPADENH DLGVGESNTI EREHMFDKVV TPSDVGKLNR LVIPKQHAEK 120 YFPLDSSTNE KGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS 180 FQRGIGELGK DRLFIDWRRR PDATDHIHYT HFTNHAPLSH HNNFYLSNIQ HPAAAAWNSP 240 LFLQPPPPSD HSHLHSRLML EPAAGSMSHH HQQSYPPHSY STYGSGPNYY YDTSQVPQQA 300 GLMQRGHNSS SVGGIGRTVE PLMFDSVPIV QGKAAAKRLR LFGVNMDCLI SDSDESCEIM 360 SSSSSLPNPA TCSHVPQFSS SPFKTFNNYD ANPPAANEEE SFDKGKASMS LNLDI

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MMNFFPGGSG FNDQGSSKGT RPFSSSSSSA SQKILVPFSY QQRSWLSSTT NNGEDSTDLV  60
MMDTRPSANL SEGDPADENH DLGVGESNTI EREHMFDKVV TPSDVGKLNR LVIPKQHAEK  120
YFPLDSSTNE KGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS  180
FQRGIGELGK DRLFIDWRRR PDATDHIHYT HFTNHAPLSH HNNFYLSNIQ HPAAAAWNSP  240
LFLQPPPPSD HSHLHSRLML EPAAGSMSHH HQQSYPPHSY STYGSGPNYY YDTSQVPQQA  300
GLMQRGHNSS SVGGIGRTVE PLMFDSVPIV QGKAAAKRLR LFGVNMDCLI SDSDESCEIM  360
SSSSSLPNPA TCSHVPQFSS SPFKTFNNYD ANPPAANEEE SFDKGKASMS LNLDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-66	91	201	3	114	B3 domain-containing transcription factor NGA1
5os9_B	2e-66	91	201	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	1e-165	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343756.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA1-like
Refseq	XP_015162593.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA1-like
Swissprot	O82799	3e-75	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	M1AWD5	0.0	M1AWD5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400031863	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2817	23	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	2e-69	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]