PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03099.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 734aa MW: 83064.8 Da PI: 6.2751

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03099.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	67.3	4.5e-21	6	72	32	98
NAM 32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ++i+e+d+yk++Pw Lp+kv +ekewyfF +rd+ky++g+r+nr+++sgyWka g+dk+++s++++ Sme2.5_03099.1_g00001.1 6 QIIAEIDLYKFDPWVLPSKVIFGEKEWYFFNPRDRKYPNGSRPNRVANSGYWKANGTDKAITSEGKK 72 679************888889*************************************95444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.044	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	7.72E-26	3	84	IPR003441	NAC domain
SuperFamily	SSF56672	1.11E-12	153	236	No hit	No description
SuperFamily	SSF56672	8.75E-5	416	466	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
GDFSLQIIAE IDLYKFDPWV LPSKVIFGEK EWYFFNPRDR KYPNGSRPNR VANSGYWKAN 60 GTDKAITSEG KKLDDWVLCR IYKRNPNVQK TCSSDLPSKE ISHGSSLPLS SQFEDNEDVI 120 AEVRQELVCG RVIIYCISIN QDDSKEGQVY IVGEGEESFQ TLKDRLTSAP VLTLPERLDG 180 IVVYCDTTRF GFVCVLMLHG KVIDYVPRQL KVHQRNYPAY DLELAAVKWE DVNIDFVVGL 240 PRIRKHLDSI WSIIDQTTKL AHFLSGETTL SVEDNVELCN LELASREDNS NAGRHVEVLN 300 VGIQGIEVGE NLSYEEALVE ILDGQVERIR KEDQHVESGI KLGRREHHMD RVAPHGLFIG 360 PFGGLCENIL SVGPRPKFPE SLSKCGFTGR VRHATSSRVL FMGVKHATSM EGLDGIVVYC 420 DAAQFGLRCI LMQHGKVIAY VPRQLKVHNH NYSARDLEFA AMKKEYVNMD FVVRLPRTQK 480 QLDSIWSIVD RMTRSAHFLS SETTLNVKDN AELCNLELVY VKVSPMEGVM DFGKKGKFKF 540 SVSKLRKLVG DTSANVPLEC VEVRENLSYE EVPVEFLDGL VERLRNEDQH VKSAMWEVGS 600 SIMQRYLYPF HSTQDYDIRA RMNKFMLAIS DLVNEECHTT ILVCEMDLSQ LMTYAGQLEG 660 EKIRKRRSGE SKNAQIENGS SFDVALRPKF QKDGVTSPKY QGDSVGGQTP PTCVEGTIRE 720 IVSPVPVHFL GMVQ

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

GDFSLQIIAE IDLYKFDPWV LPSKVIFGEK EWYFFNPRDR KYPNGSRPNR VANSGYWKAN  60
GTDKAITSEG KKLDDWVLCR IYKRNPNVQK TCSSDLPSKE ISHGSSLPLS SQFEDNEDVI  120
AEVRQELVCG RVIIYCISIN QDDSKEGQVY IVGEGEESFQ TLKDRLTSAP VLTLPERLDG  180
IVVYCDTTRF GFVCVLMLHG KVIDYVPRQL KVHQRNYPAY DLELAAVKWE DVNIDFVVGL  240
PRIRKHLDSI WSIIDQTTKL AHFLSGETTL SVEDNVELCN LELASREDNS NAGRHVEVLN  300
VGIQGIEVGE NLSYEEALVE ILDGQVERIR KEDQHVESGI KLGRREHHMD RVAPHGLFIG  360
PFGGLCENIL SVGPRPKFPE SLSKCGFTGR VRHATSSRVL FMGVKHATSM EGLDGIVVYC  420
DAAQFGLRCI LMQHGKVIAY VPRQLKVHNH NYSARDLEFA AMKKEYVNMD FVVRLPRTQK  480
QLDSIWSIVD RMTRSAHFLS SETTLNVKDN AELCNLELVY VKVSPMEGVM DFGKKGKFKF  540
SVSKLRKLVG DTSANVPLEC VEVRENLSYE EVPVEFLDGL VERLRNEDQH VKSAMWEVGS  600
SIMQRYLYPF HSTQDYDIRA RMNKFMLAIS DLVNEECHTT ILVCEMDLSQ LMTYAGQLEG  660
EKIRKRRSGE SKNAQIENGS SFDVALRPKF QKDGVTSPKY QGDSVGGQTP PTCVEGTIRE  720
IVSPVPVHFL GMVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-40	2	90	43	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-40	2	90	43	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-40	2	90	43	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-40	2	90	43	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-40	2	90	46	174	NAC domain-containing protein 19
3swm_B	2e-40	2	90	46	174	NAC domain-containing protein 19
3swm_C	2e-40	2	90	46	174	NAC domain-containing protein 19
3swm_D	2e-40	2	90	46	174	NAC domain-containing protein 19
3swp_A	2e-40	2	90	46	174	NAC domain-containing protein 19
3swp_B	2e-40	2	90	46	174	NAC domain-containing protein 19
3swp_C	2e-40	2	90	46	174	NAC domain-containing protein 19
3swp_D	2e-40	2	90	46	174	NAC domain-containing protein 19
4dul_A	1e-40	2	90	43	171	NAC domain-containing protein 19
4dul_B	1e-40	2	90	43	171	NAC domain-containing protein 19

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	6e-43	NAC domain containing protein 3