PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03125.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 433aa    MW: 47972 Da    PI: 7.8925
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03125.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-16122167147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Sme2.5_03125.1_g00003.1 122 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 167
                              899*****************************.***********996 PP
2Myb_DNA-binding54.72.3e-17174217146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Sme2.5_03125.1_g00003.1 174 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 217
                              678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.413117168IPR017930Myb domain
SMARTSM007172.4E-14121170IPR001005SANT/Myb domain
SuperFamilySSF466891.48E-27122215IPR009057Homeodomain-like
PfamPF002491.6E-15122167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-26123175IPR009057Homeodomain-like
CDDcd001675.96E-13125166No hitNo description
PROSITE profilePS5129426.846169223IPR017930Myb domain
SMARTSM007174.4E-14173221IPR001005SANT/Myb domain
PfamPF002496.1E-14174216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-20176222IPR009057Homeodomain-like
CDDcd001675.47E-11176216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSSSTSSSCS YSPMGATSMG MFFADMNSLS INTPKSLEES KGRRDSWDFR FLNKGGSFFS  60
SQSLDEAQNS VENNETIDLN ASCFHEEKPI TMHSTFNSNN NSSSSGGNGK ETENGQSKLC  120
ARGHWRPAED AKLKELVAIY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFSEE  180
EEERLMAAHR LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKYREQSSAY RRRKMGQFVY  240
RRSTTVVEEA DNSSGQNSAN HFAANSAKIN NDGPRGWVVY GPNGSSHMAV SAGEAAAIPS  300
STNNVTLLSP YSPFCAAPSF DSLPAGHCGN EVMNIVNQQG RSWDRQREIS HQHQNFTAPS  360
NSLMMMNSMQ QESQYVLQFP YVTTTQISSS SPSAAAAAAA EQELVKEDRR SNNNSDNTTI  420
APPFIDFLGV GAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-321222227107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307310.10.0transcription factor MYB117
TrEMBLK4BWW20.0K4BWW2_SOLLC; R2R3 MYB
STRINGSolyc05g007870.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-76myb domain protein 105