PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03154.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

YABBY

Protein Properties

Length: 139aa MW: 15477.6 Da PI: 4.4927

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03154.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	36.9	1.3e-11	72	96	135	159
YABBY 135 eeiqrikasnPdishreafsaaakn 159 eeiqrika+ P+i hreafsaaakn Sme2.5_03154.1_g00004.1 72 EEIQRIKAAHPEIPHREAFSAAAKN 96 9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.6E-10	72	96	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MDVLTRSIQK EVPWCMLFAD DIVLIDETHT KVVVRSAYIL PSPDPTCGIS LGGNSMQEAV 60 GYCDSEMWAL WEEIQRIKAA HPEIPHREAF SAAAKNKIPP RTLIQKGADA NEDQDLSITQ 120 SPNDPLPKQV TYAEFQIAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF517791	5e-43	EF517791.1 Solanum melongena BAC 77N19, complete sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	2e-09	YABBY family protein