PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03161.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 346aa    MW: 38821.2 Da    PI: 10.4152
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03161.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.83.1e-2827121186
                 trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                              rWt+qe+l+Li++++  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkik++e++ ++e++s
  Sme2.5_03161.1_g00007.1  27 RWTRQEILVLIQGKKVAENRIRRGRtgglelgsaQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKDWESRIKEETES 112
                              8**********************8666777777799*********************************************99999 PP

                 trihelix  78 tcpyfdqle 86 
                               +++ ++l+
  Sme2.5_03161.1_g00007.1 113 FWVMRNDLR 121
                              9*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-52792IPR009057Homeodomain-like
PfamPF138373.3E-1227117No hitNo description
PROSITE profilePS500906.42793IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MKLERLTLIP STDSGADDSN KVPRLPRWTR QEILVLIQGK KVAENRIRRG RTGGLELGSA  60
QVEPKWASVS SYCKRHGVNR GPVQCRKRWS NLAGDFKKIK DWESRIKEET ESFWVMRNDL  120
RREKKLPGFF DREVYDILDR GNGTGNGNGN GDEEGGLVLA LGSEVLFDSG KTAGDDGLFS  180
DFEPDEAGTT PHKHFPPIND PPVPNPTPIS GKNATRSQDR IPRATDVLPG RASGPRGIIV  240
GSAKQAPDTI VIKKKKKRVR HIKSSSNISH SLKFLLHKSS IPFKITEWLP GSWKQFNIRI  300
HRSVNGSTSL HSYLLKNVLR NTCDEKYLIQ IEQPQYLENT LICQGL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-146HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237569.11e-118trihelix transcription factor ASR3 isoform X1
RefseqXP_010319882.11e-118trihelix transcription factor ASR3 isoform X2
RefseqXP_015074380.11e-118trihelix transcription factor ASR3-like isoform X1
RefseqXP_015074381.11e-118trihelix transcription factor ASR3-like isoform X2
SwissprotQ8VZ202e-76ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2G2WSH91e-118A0A2G2WSH9_CAPBA; Uncharacterized protein
STRINGSolyc04g045430.2.11e-118(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-78Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]