PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03164.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26809.4 Da    PI: 8.1009
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03164.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-31959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifss+gklye++s
  Sme2.5_03164.1_g00002.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFCS 59
                             79***********************************************96 PP
2K-box98.11.3e-32801736100
                    K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                              g+ +++ ++++ +qe+ kLk+++e Lq++qR++lGedL++Lslk+L+qLe+q+++sl+kiRs+K++++++q++elq+ke +l e n
  Sme2.5_03164.1_g00002.1  80 GT-QSSPDSQNNYQEFLKLKARVEVLQQSQRNMLGEDLGQLSLKDLEQLEHQVDSSLRKIRSTKTQHMFDQLSELQQKESSLVEMN 164
                              44.577889***************************************************************************** PP

                    K-box  92 kaLrkklee 100
                              k+Lr klee
  Sme2.5_03164.1_g00002.1 165 KSLRIKLEE 173
                              *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.599161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-34282IPR002100Transcription factor, MADS-box
CDDcd002653.30E-45278No hitNo description
PRINTSPR004044.0E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-333859IPR002100Transcription factor, MADS-box
PfamPF014864.5E-2884171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.26387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLYEFCSN  60
SSMTKTLERY HRYNYGTLEG TQSSPDSQNN YQEFLKLKAR VEVLQQSQRN MLGEDLGQLS  120
LKDLEQLEHQ VDSSLRKIRS TKTQHMFDQL SELQQKESSL VEMNKSLRIK LEELGVALQT  180
SWHSGIHEQP SQPEGFFQLV DCNNTLPIRY DSVPPEHAAP STHDAAGVVH GWMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A9e-269217122101Developmental protein SEPALLATA 3
4ox0_B9e-269217122101Developmental protein SEPALLATA 3
4ox0_C9e-269217122101Developmental protein SEPALLATA 3
4ox0_D9e-269217122101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00030SELEXTransfer from AT2G03710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4485220.0AF448522.1 Lycopersicon esculentum MADS-box transcription factor MADS-RIN (MADS-RIN) mRNA, complete cds.
GenBankAF4485230.0AF448523.1 Lycopersicon esculentum MADS-box transcription factor MADS-rin mRNA, complete cds.
GenBankDQ1577960.0DQ157796.1 Lycopersicon esculentum cultivar Punjab Kesari MADS-box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075018.11e-148MADS-box protein 04g005320 isoform X2
SwissprotK4BND81e-116MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLM1CR521e-150M1CR52_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000728911e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.25e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]