PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03164.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28550.6 Da    PI: 9.0505
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03164.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-281059251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +ienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gk++eyss
  Sme2.5_03164.1_g00003.1 10 KIENKINRQVTFSKRRCGLVKKAHEISVLCDAEVALIVFSQKGKIFEYSS 59
                             69**********************************************96 PP
2K-box103.72.3e-34851769100
                    K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                               e+  +e+++ e++kLk++i+ Lqr+++h++GedL+s+slk+Lq+LeqqL+++lk iRs+K++l++e+i+elqkke+++qeen++L
  Sme2.5_03164.1_g00003.1  85 SESLVQENWSLEYTKLKARIDLLQRNHKHYMGEDLDSMSLKDLQNLEQQLDSALKLIRSRKKQLMHESISELQKKERAIQEENNML 170
                              4555689******************************************************************************* PP

                    K-box  95 rkklee 100
                              +kkl+e
  Sme2.5_03164.1_g00003.1 171 TKKLKE 176
                              ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.679161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-33290IPR002100Transcription factor, MADS-box
CDDcd002651.53E-39276No hitNo description
PRINTSPR004048.6E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.5E-3085174IPR002487Transcription factor, K-box
PROSITE profilePS5129717.34990180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGKVELRK IENKINRQVT FSKRRCGLVK KAHEISVLCD AEVALIVFSQ KGKIFEYSSD  60
SCMEQILERY ERYSYAERRL LANNSESLVQ ENWSLEYTKL KARIDLLQRN HKHYMGEDLD  120
SMSLKDLQNL EQQLDSALKL IRSRKKQLMH ESISELQKKE RAIQEENNML TKKLKEKDKI  180
VKQQGEWHHQ NNQVSTSTSF LLQPHPCINI GGNYPDEAAE ARRNELDLNL DSLYPLYNMN  240
KHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-20174173MEF2 CHIMERA
6byy_B3e-20174173MEF2 CHIMERA
6byy_C3e-20174173MEF2 CHIMERA
6byy_D3e-20174173MEF2 CHIMERA
6bz1_A3e-20174173MEF2 CHIMERA
6bz1_B3e-20174173MEF2 CHIMERA
6bz1_C3e-20174173MEF2 CHIMERA
6bz1_D3e-20174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4148600.0KC414860.1 Solanum macrocarpon MSM3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234665.11e-166MADS-box transcription factor MADS-MC
SwissprotQ6E6S71e-121AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLS5YHG11e-173S5YHG1_SOLMA; MSM3
STRINGPGSC0003DMT4000728881e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]