PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03205.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 255aa    MW: 29281.7 Da    PI: 5.9807
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03205.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1770123356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  Sme2.5_03205.1_g00003.1  70 KKRRLSLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 123
                              4558999*********************************************99 PP
2HD-ZIP_I/II129.61.3e-4169160192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrls eqvk+LE+sFe  +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++
  Sme2.5_03205.1_g00003.1  69 EKKRRLSLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKN 154
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              L++el+
  Sme2.5_03205.1_g00003.1 155 LHSELQ 160
                              ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-1966127IPR009057Homeodomain-like
SMARTSM003891.9E-1868129IPR001356Homeobox domain
PROSITE profilePS5007116.24469125IPR001356Homeobox domain
PfamPF000467.6E-1570123IPR001356Homeobox domain
CDDcd000867.70E-1670126No hitNo description
Gene3DG3DSA:1.10.10.605.3E-1972132IPR009057Homeodomain-like
PRINTSPR000311.0E-596105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5105121IPR000047Helix-turn-helix motif
PfamPF021834.6E-15125163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGFVPGAPEE NDLPPSFPSV FPPSCAPHQE FQGISSVLMR RAMSFDNQDL RGEDIDMSDD  60
DGSSQFLGEK KRRLSLEQVK ALERSFEIGN KLEPERKMQL ARALGLKPRQ IAIWFQNRRA  120
RCKTKQLEKD YEILKRQCDK LKSDNDALKT QNKNLHSELQ LLSLRSRESG TPILFNLNKE  180
NEGSNWNNGS GDDNNSTIID VNLGRTSSTN SPHHVFPTAN YKIEEQTHEE GYCNMFTNVE  240
DQTNYWPMPV QQHFY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARCKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-149HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168773.11e-157PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004666e-61HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A3Q7FLH41e-150A0A3Q7FLH4_SOLLC; Uncharacterized protein
STRINGSolyc02g067410.1.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-52homeobox 3