PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03237.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 167aa    MW: 19768.7 Da    PI: 10.1203
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03237.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.7e-2155110257
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              rkR  +++eq++ Le+ F  ++++ +e++++LA++lgL+  qV vWFqNrRa++k+
  Sme2.5_03237.1_g00002.1  55 RKRKLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKN 110
                              89****************************************************95 PP
2HD-ZIP_I/II108.35.4e-3555139185
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                              +k++ ls+eqv+lLE+sF  ++kLe+erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++++  e+ rLe+e +
  Sme2.5_03237.1_g00002.1  55 RKRKLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTRHESIIIEKYRLETESR 139
                              466778**************************************************************************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.49E-1946117IPR009057Homeodomain-like
PROSITE profilePS5007117.60551111IPR001356Homeobox domain
SMARTSM003893.3E-2053115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-2155118IPR009057Homeodomain-like
PfamPF000467.5E-1855110IPR001356Homeobox domain
CDDcd000868.17E-1655112No hitNo description
PRINTSPR000313.8E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000313.8E-691107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MIGRKVDDQM ELISQFYPQI YYQLAQEQGE AVKSQRRRKK KKSEGSSNSN GVMMRKRKLL  60
SEEQVNLLER SFGDQHKLET ERKAKLASEL GLDPHQVAVW FQNRRARWKN KKLEEEYSKL  120
KTRHESIIIE KYRLETESRL YSTLARLGLA FTEPSLCDLC IREVLFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13441QRRRKKKK
23541RRRKKKK
33641RRKKKK
43957KKKSEGSSNSNGVMMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-113HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-113HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366985.14e-77PREDICTED: homeobox-leucine zipper protein ATHB-21-like
SwissprotO232086e-50ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A3Q7FG261e-72A0A3Q7FG26_SOLLC; Uncharacterized protein
STRINGSolyc03g034120.2.12e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.18e-46homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]