PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03237.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 208aa    MW: 24782.2 Da    PI: 7.7085
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03237.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-2050105257
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              rkR  +++eq++ Le+ F  ++ + +e++++LA++lgL+  qV vWFqNrRa++k+
  Sme2.5_03237.1_g00003.1  50 RKRKLLSEEQVNLLERSFGDQHMLEKERKAKLASELGLDPHQVAVWFQNRRARWKN 105
                              89****************************************************95 PP
2HD-ZIP_I/II107.51e-3451141292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              k++ ls+eqv+lLE+sF  ++ Le+erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++a   e+ rLe+ev ++
  Sme2.5_03237.1_g00003.1  51 KRKLLSEEQVNLLERSFGDQHMLEKERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTQHEATIIEKYRLEAEVLKM 136
                              66778********************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                              +e+l 
  Sme2.5_03237.1_g00003.1 137 KEQLC 141
                              *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.62146106IPR001356Homeobox domain
SMARTSM003892.0E-1948110IPR001356Homeobox domain
PfamPF000462.7E-1750105IPR001356Homeobox domain
CDDcd000869.46E-1650107No hitNo description
SuperFamilySSF466893.18E-1850114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2050113IPR009057Homeodomain-like
PRINTSPR000315.2E-67786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000315.2E-686102IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MIGNKVDDQM ELISQFYPQI YSQLAQEQGE VVKSQRRRKK KKSEGEVVMR KRKLLSEEQV  60
NLLERSFGDQ HMLEKERKAK LASELGLDPH QVAVWFQNRR ARWKNKKLEE EYSKLKTQHE  120
ATIIEKYRLE AEVLKMKEQL CEAEKKIQRL LLEHNYNISS DNSPTSSIFT MEQPHFNLEE  180
LAREGQLMDD NKLFVADYQS NYMTLWDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13441QRRRKKKK
23541RRRKKKK
33552RRRKKKKSEGEVVMRKRK
43641RRKKKK
53852KKKKSEGEVVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-115HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366985.11e-125PREDICTED: homeobox-leucine zipper protein ATHB-21-like
SwissprotQ9ZU707e-58ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLM1BIA91e-117M1BIA9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000458551e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-55homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]