PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03250.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 258aa    MW: 30600.6 Da    PI: 9.34
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03250.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-182471148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT++Ed ll+++vk++G g+W+++a+  g++R +k+c++rw +yl
  Sme2.5_03250.1_g00006.1 24 KGPWTADEDRLLIEYVKLHGEGRWNSVANLTGLRRNGKSCRLRWVNYL 71
                             79********************************************97 PP
2Myb_DNA-binding51.22.9e-1677121147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Sme2.5_03250.1_g00006.1  77 RGQITPNEERIIIELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 121
                              7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0011971IPR017930Myb domain
SuperFamilySSF466892.4E-3021118IPR009057Homeodomain-like
SMARTSM007175.6E-162373IPR001005SANT/Myb domain
PfamPF002495.1E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-232578IPR009057Homeodomain-like
CDDcd001673.16E-112671No hitNo description
PROSITE profilePS5129424.64472126IPR017930Myb domain
SMARTSM007174.9E-1476124IPR001005SANT/Myb domain
PfamPF002493.9E-1477121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2479125IPR009057Homeodomain-like
CDDcd001671.31E-981122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVCEIISEQI GNNWGFIEEI GWRKGPWTAD EDRLLIEYVK LHGEGRWNSV ANLTGLRRNG  60
KSCRLRWVNY LRPDLKRGQI TPNEERIIIE LHARWGNRWS TIARSLPGRT DNEIKNYWRT  120
HFKKKTKNLC DNSEKSRARL WKRQQFHQQQ RQQINNQIEV KRVMPLPTMP HQSKQEMTIL  180
YPNNTIDQQE QVGLFYSMLN NNSTSISPLE PSSSNEDVMW DDLWNLDDFY GHFINTTTYN  240
KTNNTPCLQP MATIPTFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-272412627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-143HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568105.11e-149PREDICTED: myb-related protein 305-like isoform X1
TrEMBLA0A1U8GAE61e-147A0A1U8GAE6_CAPAN; myb-related protein 305-like isoform X1
TrEMBLA0A2G3CS141e-147A0A2G3CS14_CAPCH; Transcription factor MYB59
STRINGPGSC0003DMT4000037961e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.17e-72myb domain protein 305