PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03255.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 217aa MW: 23859.2 Da PI: 8.1923

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03255.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.6	7.7e-42	44	143	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r d+++slvyeA++r+rdPvyG++g i++lqqq Sme2.5_03255.1_g00006.1 44 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADTANSLVYEANVRLRDPVYGCMGAISALQQQ 129 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 ++ l+ael+++++e Sme2.5_03255.1_g00006.1 130 VQALQAELNVIRAE 143 *******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.463	43	144	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-42	44	141	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSRERERYEE IGKKIKREAD DYSQMGRRYM LVPPGSTTLN TVTPCAACKL LRRRCAQECP 60 FSPYFSPHEP QKFASVHKVF GASNVSKMLM EVPESQRADT ANSLVYEANV RLRDPVYGCM 120 GAISALQQQV QALQAELNVI RAEILKYNTT TLIPSSHITS LLSSGAVSIA TLPPPPPPLT 180 MLPSTISSAD ATMYAQPSTT ATEFSTISSE NNISYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	37	156	4	125	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	37	156	4	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-114	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-114	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361319.1	1e-136	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-86	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	M1CU61	1e-135	M1CU61_SOLTU; Uncharacterized protein
STRING	Solyc06g050430.2.1	1e-128	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-86	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]