PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03260.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YC
Protein Properties Length: 451aa    MW: 50896.5 Da    PI: 4.7038
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03260.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.41.1e-161762502498
                    NF-YC  24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                              arikki++adedv +i+  +P l+ska elf+ +l  r++  + ++  +t++   ++ ++++ ++fdfl d+v r
  Sme2.5_03260.1_g00001.1 176 ARIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKHCIQSFNVFDFLKDVVSR 250
                              8***********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF059191.1E-183692IPR008686RNA-dependent RNA polymerase, mitoviral
PfamPF008082.9E-15175235IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.0E-22176249IPR009072Histone-fold
SuperFamilySSF471132.79E-18182251IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVQGMAGQIW ISTLFMLGEK VELDIESYWI DLVLPYRNYA LLGDDILITD SNVAQQYRKL  60
LDRLGVTISE SKSIISDNGT IEFAKRNREE GINFFISFLK SHRFDPVEFV VGVELKYVFL  120
FGSWELPCLY VSFSIVGIKR ILLLGEKVEL EYVFLFGSWE LPCFNFSLFF CGNKAARIKK  180
IMQADEDVGK IALAVPLLVS KALELFLQDL CDRTYEITLK KGAKTMNSFH LKHCIQSFNV  240
FDFLKDVVSR VPDLGGSDAG AESATKRRKV AEEDDHYSDD DIKRNHMNET ANNSGTGRGR  300
GRGRGRGRGR GARAAEKGDS NVHSEKLEDP SADVSHQKDD EKPKQNDERM VDHVAEPAAD  360
SKNILAAKHP SEVVAPARNF DLNIDLNEKT TSNQQVTDDF FVNIKDKLED TIETIPGWSL  420
SEMEKMAIDP IQLANLNRGL DEEEEDYDEE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-171762361575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299309RGRGRGRGRGR
2301310RGRGRGRGRG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754507e-88HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340356.11e-131PREDICTED: dr1-associated corepressor isoform X1
TrEMBLM1CM701e-130M1CM70_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000704501e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.15e-49nuclear factor Y, subunit C11