PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03374.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 251aa MW: 27662.7 Da PI: 6.6754

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03374.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.1	0.00018	146	182	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Sme2.5_03374.1_g00001.1 146 EKLGDRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 182 66778889999999887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.455	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-8	137	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.13E-7	138	186	No hit	No description
SuperFamily	SSF47459	2.75E-10	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MFASSRVWPQ GGLSVDEEKF GISPFQEAGN SEDQNLNSVH PTSSTTNFRV PVADVKPELA 60 QLYDYHHHVH DKFQVSSSLQ EKMELATDHF TRPLIHSNWS QQDLPSPASS CITTGLSSHN 120 LLNFSNNKRE HKHQHPDHNS SEVRKEKLGD RITSLHQLVS PFGKTDTASV LSEAIGYIRF 180 LQTQIQALSS PYLGNASGSM GHIPQQSLND SQHKSMDLRS RGLCLVPISC MANIGSDTAA 240 DYWAPALGGG F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006356148.1	1e-154	PREDICTED: transcription factor bHLH68-like isoform X2
Swissprot	Q8S3D1	8e-41	BH068_ARATH; Transcription factor bHLH68
TrEMBL	M1BD81	1e-148	M1BD81_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400042541	1e-149	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-42	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]