PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03387.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 253aa    MW: 28427.9 Da    PI: 9.7771
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03387.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.5e-1414102198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffkv+     ++s+ l++p   + + +g+k e+ tl+   +   +W+v++ ++ k++ + ++kGW+eFv+  +L+ gDf vF++ g
  Sme2.5_03387.1_g00005.1  14 FFKVM--VPGFQSK-LIIPPAICLKLKGDKSEKGTLI---KGKDTWTVEV-VQSKKDVISFEKGWEEFVQNYKLRIGDFAVFEHLG 92 
                              77888..5566665.9*******99977766655555...5678******.456666799*************************9 PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                              +++f   v++++
  Sme2.5_03387.1_g00005.1  93 NMNF--AVTLLD 102
                              9999..777766 PP
2B356.26.4e-181662411489
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                + +p +f++++g+   +++t+tl+ +sg+s+ v l++++++++    +t+GW +F ++n+Lk+gD+++F+ld++++
  Sme2.5_03387.1_g00005.1 166 PYMHIPTEFCQSNGLF--QNTTITLTGPSGKSYPVSLRICNGGKTlyACITRGWHDFFSSNKLKVGDVCIFQLDRSKS 241
                              4589*********988..6779***************9999988888889***********************98743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.89811104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-1912106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-1712106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-1212102No hitNo description
SMARTSM010191.3E-1114104IPR003340B3 DNA binding domain
PfamPF023623.7E-1114101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-20150240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-19151239IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-11152245IPR003340B3 DNA binding domain
CDDcd100171.73E-18152241No hitNo description
PROSITE profilePS5086312.21153253IPR003340B3 DNA binding domain
PfamPF023624.9E-15167241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTSSSPELPI SRRFFKVMVP GFQSKLIIPP AICLKLKGDK SEKGTLIKGK DTWTVEVVQS  60
KKDVISFEKG WEEFVQNYKL RIGDFAVFEH LGNMNFAVTL LDSTGCDKKL LENGEQVSSQ  120
KKKVKSAPCG IEKKKLEGDQ PHYQCVKGSS EFTARMKEYN LRKRSPYMHI PTEFCQSNGL  180
FQNTTITLTG PSGKSYPVSL RICNGGKTLY ACITRGWHDF FSSNKLKVGD VCIFQLDRSK  240
SDSNSIAMDV RVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-109HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356280.11e-160PREDICTED: B3 domain-containing protein REM9-like
TrEMBLM1CBG71e-158M1CBG7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000639321e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-22B3 family protein