PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03411.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

YABBY

Protein Properties

Length: 176aa MW: 19799.4 Da PI: 9.5637

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03411.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	228.9	1.3e-70	7	170	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 ssse+vCy+qCnfCntilav+vP + ++++vtvrCGhC++lls n+ q+ + ++ ++l+ ++ + +++ +n+ + +++ Sme2.5_03411.1_g00006.1 7 SSSSERVCYLQCNFCNTILAVNVPCNNMLTIVTVRCGHCANLLSANIGSLLQAFPFQDV--QKLQRQQYTNVENNASNYMAYGSSS 90 6899**************************************************996..4444444444444444444443333 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+ +s + +++s+ + e+ p irPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Sme2.5_03411.1_g00006.1 91 SSS-SSSKFNRFSTIVSPEIESRIPPIRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGL 170 333.3333445577666666555556***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-71	9	170	IPR006780	YABBY protein
SuperFamily	SSF47095	1.18E-7	115	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.4E-4	118	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MTSFSSSSSS ERVCYLQCNF CNTILAVNVP CNNMLTIVTV RCGHCANLLS ANIGSLLQAF 60 PFQDVQKLQR QQYTNVENNA SNYMAYGSSS SSSSSSKFNR FSTIVSPEIE SRIPPIRPPE 120 KRQRVPSAYN QFIKEEIQRI KANNPEISHR EAFSTAAKNW AHFPRIHFGL KLEGNK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667754	0.0	KJ667754.1 Solanum melongena FAS protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234390.1	1e-104	YABBY transcription factor
Swissprot	Q9XFB0	1e-64	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A068FJR7	1e-125	A0A068FJR7_SOLME; FAS protein
STRING	Solyc11g071810.1.1	1e-104	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-56	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]