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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_03416.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 305aa MW: 33985 Da PI: 9.7068 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_03416.1_g00002.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 319 | 1.5e-97 | 1 | 305 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdaki...........rernlalsekkaavaerd..........maflqr 63
md +gs++ rn+gy+ep+ + lk +lglqlmss+ae+ + + s++ +a++++ m++ +
Sme2.5_03416.1_g00002.1 1 MDGNGSMNmRNWGYFEPTpTVLKGHLGLQLMSSMAEKPLHFgnihdhqqyqpDHPTVMASTNGGAFHHHRvcgllespmpMEY-MM 85
999**************9999**************998877777665555432222223333344444448************.99 PP
GAGA_bind 64 dkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkk 149
d++++ + ++k+l++l +++ +g++ l++t+s++s+q++++p+l + + ++ + ++++ +kk
Sme2.5_03416.1_g00002.1 86 DAWVNP-----KDYREKYLNVLSANHP----YLTGYGFLPETSSTQSMQMHQQPNLVKVETA------PLVEDVCQERDIGGLAKK 156
******.....5567899999997776....55799**************776666544333......223333444444433333 PP
GAGA_bind 150 kkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
+ ++++ k++k kk+k+ ++++k++++++ +r++a++ks ++ +ng+++D+s +P+P+CsCtGa +qCY+WG+GGWqSaCC
Sme2.5_03416.1_g00002.1 157 RG-DGKSQVLKSPKPKKAKQATRAPKDESTSSL--PRARAPRKSAEVIINGINMDISEIPIPICSCTGAAQQCYRWGCGGWQSACC 239
33.444566677777777776767766665555..89************************************************* PP
GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tt++S yPLP++ krrg+RiagrKmS gafkk+LekLa+eGy++snp+DLk hWA+HGtnkfvtir
Sme2.5_03416.1_g00002.1 240 TTNLSSYPLPMNVKRRGSRIAGRKMSLGAFKKVLEKLASEGYNFSNPIDLKPHWARHGTNKFVTIR 305
*****************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MDGNGSMNMR NWGYFEPTPT VLKGHLGLQL MSSMAEKPLH FGNIHDHQQY QPDHPTVMAS 60
TNGGAFHHHR VCGLLESPMP MEYMMDAWVN PKDYREKYLN VLSANHPYLT GYGFLPETSS 120
TQSMQMHQQP NLVKVETAPL VEDVCQERDI GGLAKKRGDG KSQVLKSPKP KKAKQATRAP 180
KDESTSSLPR ARAPRKSAEV IINGINMDIS EIPIPICSCT GAAQQCYRWG CGGWQSACCT 240
TNLSSYPLPM NVKRRGSRIA GRKMSLGAFK KVLEKLASEG YNFSNPIDLK PHWARHGTNK 300
FVTIR
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 167 | 174 | PKPKKAKQ |
