PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03441.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 482aa    MW: 53869.6 Da    PI: 6.8071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03441.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001887104219
                              EETTTTEEESSHHHHHHH CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                              +C++Cgk Fs++ ++  H
  Sme2.5_03441.1_g00002.1  87 VCENCGKEFSSWKSFLEH 104
                              6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-51739No hitNo description
PfamPF139120.00511739IPR007087Zinc finger, C2H2
PROSITE profilePS501578.581739IPR007087Zinc finger, C2H2
SMARTSM003555.71739IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-581105No hitNo description
SMARTSM0035518086106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.15E-7228251No hitNo description
PfamPF139121.4E-9229253IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076229256IPR007087Zinc finger, C2H2
SMARTSM003550.13229251IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SuperFamilySSF576673.15E-7291318No hitNo description
PfamPF139126.3E-13296319IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328296318IPR007087Zinc finger, C2H2
SMARTSM003550.52296318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDCIDQEQQQ QQPIFKHYCR ICKKGFVCGR ALGGHMRAHG IGDEGANIDD DDQASDWEDK  60
FGGSVKGGKK RMYQLRTNPN RQKSNRVCEN CGKEFSSWKS FLEHGKCTSE DAESLVSSPC  120
SEGEDYINNG GNKGYGLSKR KRSLRTKIGT INTSTYPSSE DEDLVLAKCL IDLANAKVDM  180
SLDEPEESCA SASKDEERAR NPMNYLTSLV STRMPFDNKA KGVSNKGLFE CKACKKVFNS  240
HQALGGHRAS HKKVKGCYAA KQDQLDDSLI DDQDMNITQD EFTLQGSKSI RKSKIHECSI  300
CHRVFSTGQA LGGHKRCHWI TSNSPDSTSK FNFHGHMEQI NLRSNLRKSS DALDLNIPIS  360
HEDMSRIRRD PMNPLSFDVS TEIHLHPWSS NPHEAKEHSC SENYYLDEIK NNNNNNNNNN  420
NCVNNGNNNI NGTLQNAEDD EADSKLKLAK LSELKDMNKN SENPSHWLQV GIGPTTEVGA  480
DP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345608.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLM1AA060.0M1AA06_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000180760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-31C2H2-like zinc finger protein