PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03464.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 473aa MW: 52273.1 Da PI: 6.4105

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03464.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg++F + ++ +H ++ Sme2.5_03464.1_g00002.1 103 FECPVCGTVFGSEEEVSVHVDSC 125 89**************9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00734	0.0044	102	126	IPR006642	Zinc finger, Rad18-type putative
CDD	cd09212	1.43E-20	155	243	No hit	No description
SuperFamily	SSF143503	7.85E-18	158	225	IPR018997	PUB domain
SMART	SM00580	4.4E-18	161	228	IPR018997	PUB domain
Pfam	PF09409	4.3E-16	163	236	IPR018997	PUB domain
SuperFamily	SSF54236	1.42E-12	332	445	IPR029071	Ubiquitin-related domain
Pfam	PF00789	3.9E-5	361	411	IPR001012	UBX domain
PROSITE profile	PS50033	10.732	361	445	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	8.6E-8	361	445	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0050832	Biological Process	defense response to fungus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MGDMKDKMKG FMKKVSFSSS GKFKGQGRVL GSSSSSSGVP PNLSSQNLHT KPLPQKLVNS 60 DQRIEDKCVN QVKKSELKDG FDPYGELVTS SKRNPNGHSL NVFECPVCGT VFGSEEEVSV 120 HVDSCLTSEV TDLRVESNVE EVKSEVEECV SVYVSGKPSD GSVDVVMKLL GNIVKEPTNA 180 KFRKIRMGNS KIKEAIGDVV GGVELLEFVG FELKEESGEI WAVMDVPSEE QLVKLKNVVS 240 VLEPNKVEVL ASASRVKASE PVEPKKIDRQ ESLGATVKLS LCDYKSWVQV VESTIDAYIR 300 IKVFFSVSES VAAKIVLPDS FFNLSSEELR REAEMKRKKL EESKLLIPKS YREKQAKAAR 360 KKYTKSIIRV QFPDGVLLQG VFLPSEPTSA LYEFVSSALK EPSLEFDLLH PVLVKRRVIP 420 HFPAAGQRAI TLEQEDLIPS ALLKFKPIET DSVVFTGLRN ELLEISEPLE AGS

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MGDMKDKMKG FMKKVSFSSS GKFKGQGRVL GSSSSSSGVP PNLSSQNLHT KPLPQKLVNS  60
DQRIEDKCVN QVKKSELKDG FDPYGELVTS SKRNPNGHSL NVFECPVCGT VFGSEEEVSV  120
HVDSCLTSEV TDLRVESNVE EVKSEVEECV SVYVSGKPSD GSVDVVMKLL GNIVKEPTNA  180
KFRKIRMGNS KIKEAIGDVV GGVELLEFVG FELKEESGEI WAVMDVPSEE QLVKLKNVVS  240
VLEPNKVEVL ASASRVKASE PVEPKKIDRQ ESLGATVKLS LCDYKSWVQV VESTIDAYIR  300
IKVFFSVSES VAAKIVLPDS FFNLSSEELR REAEMKRKKL EESKLLIPKS YREKQAKAAR  360
KKYTKSIIRV QFPDGVLLQG VFLPSEPTSA LYEFVSSALK EPSLEFDLLH PVLVKRRVIP  420
HFPAAGQRAI TLEQEDLIPS ALLKFKPIET DSVVFTGLRN ELLEISEPLE AGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	2e-15	317	445	24	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006354104.1	0.0	PREDICTED: plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	M1D518	0.0	M1D518_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400081775	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10112	6	6

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]