PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03471.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 182aa    MW: 20827.5 Da    PI: 9.8848
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03471.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81e-2874134160
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                              ++Dgy+WrKYGqK+ +++++pr++++C++a +Cpvkkkv+r+ +d+++++ tYegeHnh+k
  Sme2.5_03471.1_g00002.1  74 VKDGYEWRKYGQKVTRDNPYPRAFFKCSFApTCPVKKKVQRCVDDKSIIVATYEGEHNHSK 134
                              58***************************99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-2865133IPR003657WRKY domain
SuperFamilySSF1182908.63E-2569133IPR003657WRKY domain
PROSITE profilePS5081124.54769135IPR003657WRKY domain
SMARTSM007742.2E-3074134IPR003657WRKY domain
PfamPF031065.3E-2375132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSNCTASGMS RKRKAENVGL FDARFHGINS ELSDEDLSCN KARLVHHDHF QPKKINYTRY  60
VRTTQASHDT ALIVKDGYEW RKYGQKVTRD NPYPRAFFKC SFAPTCPVKK KVQRCVDDKS  120
IIVATYEGEH NHSKELLETG EGSSDQLVNG NRRISTSITA VGHSHNKQPE FHKLLKTKWL  180
HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1958132171WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-34HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346606.29e-66PREDICTED: probable WRKY transcription factor 40
TrEMBLM1CSI66e-65M1CSI6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000737101e-65(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1725555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.26e-37WRKY DNA-binding protein 18