PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03490.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 201aa    MW: 22538.6 Da    PI: 5.7807
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03490.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB145.71.1e-4525118295
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              +eq +f+P anv+rim+k lP +akis+++k  +qec++efisfvt+ea+d+cq+e+rkti+++dllwa+ +lGf+dy+epl +yl
  Sme2.5_03490.1_g00002.1  25 KEQVHFMPTANVVRIMRKFLPPQAKISDKSKVAIQECITEFISFVTGEANDHCQQEQRKTITAEDLLWAIDKLGFDDYIEPLALYL 110
                              79999********************************************************************************* PP

                    NF-YB  88 kkyreleg 95 
                              ++yre++g
  Sme2.5_03490.1_g00002.1 111 HRYREFDG 118
                              *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-4119117IPR009072Histone-fold
PfamPF008081.3E-223094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.49E-3330118IPR009072Histone-fold
PRINTSPR006153.0E-145876No hitNo description
PRINTSPR006153.0E-147795No hitNo description
PRINTSPR006153.0E-1496114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSRELPAHLN QEIFVTVKDS DCAIKEQVHF MPTANVVRIM RKFLPPQAKI SDKSKVAIQE  60
CITEFISFVT GEANDHCQQE QRKTITAEDL LWAIDKLGFD DYIEPLALYL HRYREFDGRG  120
SLKGEPCMVK HPMVDSASGC NIIPYHLPPN FSMAHHHGYF VFPPTMTKYM QADTSNGSTS  180
LSTVAAVDSE VDSPAKEGTS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-4820115297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356442.24e-95PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X2
RefseqXP_015168332.17e-95PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1
RefseqXP_015168333.17e-95PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1
RefseqXP_015168334.14e-95PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X2
SwissprotQ84W663e-50NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLA0A314KWR72e-88A0A314KWR7_NICAT; Nuclear transcription factor y subunit b-6
STRINGSolyc10g009440.2.15e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.26e-53nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Kim HU, et al.
    Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues.
    FEBS Open Bio, 2013. 4: p. 25-32
    [PMID:24363987]
  3. Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M
    Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants.
    Mol Plant, 2017. 10(4): p. 645-648
    [PMID:27871811]
  4. Li D, et al.
    MYB89 Transcription Factor Represses Seed Oil Accumulation.
    Plant Physiol., 2017. 173(2): p. 1211-1225
    [PMID:27932421]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Han JD, et al.
    Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program.
    Front Plant Sci, 2017. 8: p. 439
    [PMID:28421087]