PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03528.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 296aa MW: 32598.7 Da PI: 6.6712

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03528.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.9	2.7e-34	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Sme2.5_03528.1_g00005.1 47 RPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKAMGVKGLTLYHLKSHLQKYRL 101 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-32	44	102	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.548	44	104	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-17	46	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-24	48	102	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-9	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	2.5E-26	145	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MYSALGMDKN GGVNEYHHHI HNLQSSFSGE MTNLPGDTCL VLTADHRPRL RWTAELHERF 60 VDAVTQLGGP DKATPKTIMK AMGVKGLTLY HLKSHLQKYR LGRQSKEAAE NFKDESCMAE 120 SQDTTSSVSG SSKVVPQDIN DCGYQVTEAF RVQIEVQRRL HEQLEVQRHV QLRIEAQGKY 180 LQTILEKACK VLNYTSVDSP DLDTAREQLS ELAIKGANNC DGIVTVSSLP EVTASFQNKN 240 ASDIPATIGD CLPSDTTIAS PTSIGVLKKR PRALANGDAS PVDNNMAQVQ WMMTNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	1e-125	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015059334.1	0.0	protein PHR1-LIKE 3-like isoform X1
Swissprot	Q8LAJ7	1e-101	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	M0ZZT5	0.0	M0ZZT5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400011598	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-101	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]