PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03548.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 229aa MW: 26153.6 Da PI: 9.0814

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03548.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.4e-06	62	81	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Sme2.5_03548.1_g00002.1 62 FACNICNKTFNRYNNMQMHM 81 78*****************9 PP
2	zf-C2H2	17.4	1.3e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F k + ++H +++ Sme2.5_03548.1_g00002.1 146 FSCRKCGKTFAVKGDWRTHEKNC 168 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.71E-6	48	85	No hit	No description
Pfam	PF12874	1.6E-4	62	81	No hit	No description
PROSITE profile	PS50157	10.783	62	89	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.9E-6	62	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.095	62	84	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	109	141	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.53E-5	132	166	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-4	132	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	146	166	IPR007087	Zinc finger, C2H2
SMART	SM00355	32	146	166	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEKVRVSLHI GLPDVDEAKP FKEEENKEKH SSTIVNKGCN FNSESRFWIP TPAQILVGPM 60 QFACNICNKT FNRYNNMQMH MWGHGSEYRK GPESLRGTQP AAMLRLPCYC CAQGCKNNIN 120 HPRAKPLKDF RTLQTHYKRK HGTKSFSCRK CGKTFAVKGD WRTHEKNCGK LWYCTCGSDF 180 KHKRSLKDHI RSFGKGHSPH PSLGGFDDKD YCINNSTGGS SDDDDDEMN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241317.1	1e-157	zinc finger protein WIP3
Swissprot	Q9SGD1	1e-107	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A3Q7GZU7	1e-156	A0A3Q7GZU7_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400018308	1e-144	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-110	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]