PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03550.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 205aa    MW: 23720.9 Da    PI: 8.6202
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03550.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-08641148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W+++Ed+ll+d++k++G            + R++k+c++rw +yl
  Sme2.5_03550.1_g00002.1  6 KGAWSPQEDKLLLDYIKKHG------------LSRSGKSCRLRWVNYL 41
                             79******************............46899*********97 PP
2Myb_DNA-binding49.41e-154792148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+++ eE + +++ ++ lG++ W++Ia++++ gR+++++k++++++l
  Sme2.5_03550.1_g00002.1 47 RGPFSLEETQTIIRMHQSLGNR-WSAIAKELP-GRCDNEIKNFYNTHL 92
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.918141IPR017930Myb domain
SuperFamilySSF466892.58E-22588IPR009057Homeodomain-like
SMARTSM007173.7E-6543IPR001005SANT/Myb domain
PfamPF002491.1E-7641IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-14748IPR009057Homeodomain-like
PROSITE profilePS5129421.5294296IPR017930Myb domain
SMARTSM007172.1E-154694IPR001005SANT/Myb domain
PfamPF002491.3E-144792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-264995IPR009057Homeodomain-like
CDDcd001675.90E-114992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDYVTKGAWS PQEDKLLLDY IKKHGLSRSG KSCRLRWVNY LRPDLKRGPF SLEETQTIIR  60
MHQSLGNRWS AIAKELPGRC DNEIKNFYNT HLKKRVEVKP TKAKVEKAKQ IEMFQKKPTA  120
SAPDQSLHEF TKSSSSSYIT FDENYRILEM LDQNNDVTSV VNDENIVILE SNPSSLDLYK  180
KDVSVHSSNV DFWLELYMAA DNLNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-234985110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078427.11e-93transcription factor MYB14-like
TrEMBLK4C4L16e-89K4C4L1_SOLLC; Uncharacterized protein
TrEMBLM1CMY68e-89M1CMY6_SOLTU; Uncharacterized protein
STRINGSolyc06g033870.1.11e-89(Solanum lycopersicum)
STRINGPGSC0003DMT4000709121e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-42myb domain protein 14