PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03593.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 946aa    MW: 107348 Da    PI: 7.6508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03593.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031914940123
                              EEET..TTTEEESSHHHHHHHHHH..T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                              ykC+  dCg +F+  s++ rH r+  H
  Sme2.5_03593.1_g00002.1 914 YKCKveDCGLTFRFVSDYSRHRRKtgH 940
                              9**********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035554831853IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.99E-6842891No hitNo description
SMARTSM003550.1854878IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.281854883IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-5855882IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280856878IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-10883908IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635884913IPR007087Zinc finger, C2H2
SMARTSM003550.0023884908IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280886908IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-10894936No hitNo description
Gene3DG3DSA:3.30.160.602.9E-10909937IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.52914940IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473914940IPR007087Zinc finger, C2H2
PROSITE patternPS000280916940IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    Send to blast
MWEAESKMHI NSYNTIWMGS MENNQSILEE NLILKAGNDN SFKFWRYGWI DQTTLSESFP  60
DLFSICTNPN AMVSDCWSIQ GWNLLGIQNC SIWRGSIPTK SAMFHLFWKC LGSETRWFGH  120
VQMRSVDAPF RRRKRLDSVV TQRGRDRPKR YWDEVIRQDM PQLHITENIT LDKKEWRSHN  180
MIEVDRIERN GVHSLNHDEV SLTAPPSESS VSPHEGQTLQ AYRLSLTDNA ALTSKVDLGK  240
ECDVFRRPRI FCLEHAIQTE ELLHTKGGAN VLVICHSDFQ KIRGHAAVVA EEVGMAFKCN  300
EIPLAIASQG HLSLIDLAIG DEEQDKCAED WTLKLHINIR HCVKVQRNCP LTKLKHALIL  360
GGLFSDTIRS SDSLSLLNWQ SRKMRSKRKL NNSTESTPFA NVQKANVVSG STVDVQNARK  420
GNITIQYSRK KYKPKACSSA EVTRVFMDPF NVSKEVSPDA KILESTLLRD ENAGTASLAE  480
RSISASDRKP RLRHEDEMLL LNRDQNGNLL APQEADLLVT TSLMVELDEA QAEICTTEKF  540
SLEDKTCDTN SNSFHTENTS MAAETNGEIE TTHVHTTACT FIYVVQRTAD DENLVENRDI  600
TESVTRDKSA HPMETDFDRD HHNEDDKVIM TRSPMRVNSS GSCTDGPSRS CGKKIEDQVS  660
QQFGSGSQSS DSDMLHKSVE QEVQIDNSVK NIAVSDHVTL IEEASASAVS LKMTRETSNT  720
KHSRSGDDIS EQHKKESDDD TTSAIVLRPT GKNGGKRRRE LDLLTGDGYS VSGFVKSPCE  780
GLRPRARKNV PGSRVDTKEL VEKKPMGNKV KRSLHSSVIP KNKKEERKET HRCNLEGCCM  840
SFQTKEELQL HKHNRCPVEG CEKKFTSHKY ALVHQRVHEN DRPLKCPWKG CTMTFKWAWA  900
RTEHLRVHTG ERPYKCKVED CGLTFRFVSD YSRHRRKTGH YVDAVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-5383094622138Lysine-specific demethylase REF6
6a58_A3e-5383094622138Lysine-specific demethylase REF6
6a59_A3e-5383094622138Lysine-specific demethylase REF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338884.10.0PREDICTED: probable lysine-specific demethylase ELF6 isoform X1
TrEMBLA0A0V0IZG60.0A0A0V0IZG6_SOLCH; Putative lysine-specific demethylase ELF6-like
STRINGSolyc04g028560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48351721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.13e-58C2H2 family protein