PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03616.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WOX
Protein Properties Length: 256aa    MW: 27561.7 Da    PI: 6.9457
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03616.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.8e-152282257
                             T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             r+R+++++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Sme2.5_03616.1_g00007.1 22 RSRWNPKPEQILILESIFNSgMVNPPKDETVRIRKILqqfgAVGDANVFYWFQNRRSRSRR 82
                             89*****************99****************99999****************997 PP
2Wus_type_Homeobox107.38.9e-352184265
        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                             +r+RW+P+peQi iLe++++sG+++P+k+e+ ri++ L+++G+++d+NVfyWFQNr++R+r++q
  Sme2.5_03616.1_g00007.1 21 VRSRWNPKPEQILILESIFNSGMVNPPKDETVRIRKILQQFGAVGDANVFYWFQNRRSRSRRRQ 84
                             589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-141789IPR009057Homeodomain-like
PROSITE profilePS5007111.1431883IPR001356Homeobox domain
SMARTSM003891.5E-62087IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-82187IPR009057Homeodomain-like
PfamPF000463.7E-132282IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MENEVQDSTS SNQSCERNEP VRSRWNPKPE QILILESIFN SGMVNPPKDE TVRIRKILQQ  60
FGAVGDANVF YWFQNRRSRS RRRQRQIQAS LSAASDSSGG GGKQSASSGG AIQLDSSTGN  120
FRPSLPMAAP SNYLVLGSSF SSSSSGGAVG NANDGSDGLL PFSDQMGLPK IEQNSAVTSI  180
QCSPTDNVNL HHQTGFITVF INGVATEVPR GPLDMKAMFG PGNLVLYHSS GLPVLVNEYG  240
FIVQSLQHGE SYFLVS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755187e-62HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609299.21e-138PREDICTED: WUSCHEL-related homeobox 11 isoform X2
SwissprotQ6X7J32e-64WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A2S1B7G51e-137A0A2S1B7G5_TOBAC; WOX11
STRINGXP_009609298.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61662231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.25e-34WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]