PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03646.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 672aa    MW: 73913.1 Da    PI: 8.2938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03646.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63.1e-1370118155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a++k++g
  Sme2.5_03646.1_g00001.1  70 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDVAAQKFRG 118
                              78****9888.8*********3.....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-1770126IPR016177DNA-binding domain
CDDcd000181.80E-2570125No hitNo description
PfamPF008477.5E-970118IPR001471AP2/ERF domain
SMARTSM003801.3E-3071132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2071123IPR001471AP2/ERF domain
PROSITE profilePS5103220.3171126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.4E-11124212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-7165206IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.713176212IPR003340B3 DNA binding domain
SuperFamilySSF559203.27E-82393671IPR000994Peptidase M24, structural domain
HamapMF_0197439.654427672IPR002467Peptidase M24A, methionine aminopeptidase, subfamily 1
Gene3DG3DSA:3.90.230.105.2E-95428671IPR000994Peptidase M24, structural domain
TIGRFAMsTIGR005001.3E-81429671IPR002467Peptidase M24A, methionine aminopeptidase, subfamily 1
CDDcd010868.55E-134435670No hitNo description
PfamPF005574.8E-50437663IPR000994Peptidase M24, structural domain
PRINTSPR005992.1E-18492505IPR001714Peptidase M24, methionine aminopeptidase
PRINTSPR005992.1E-18514530IPR001714Peptidase M24, methionine aminopeptidase
PRINTSPR005992.1E-18584596IPR001714Peptidase M24, methionine aminopeptidase
PROSITE patternPS006800590608IPR002467Peptidase M24A, methionine aminopeptidase, subfamily 1
PRINTSPR005992.1E-18614626IPR001714Peptidase M24, methionine aminopeptidase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004177Molecular Functionaminopeptidase activity
GO:0008235Molecular Functionmetalloexopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEGSSSIDQE STTSDSLSIA PTASSSMILP PSTTIKSPPE QSLCRMGSGT SVIIDAENGI  60
EAESRKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EENEAARAYD VAAQKFRGRD  120
AVTNFKPLLE SQESDDMEIA FLNSHSKAEI VDMLRKHTYL DELEQSKKLF GFTKDGWSRF  180
VKEKNLKAGD VVSFQRSTSG DKQLYIDFKA KNLMATSTVV TNQVQAQVQI PQTSCSPVGP  240
SGALVELVME GSGCPIVPPG HLGFLLGSLQ TDRYNILGKL SRIPKQHHKL WANTHEKLLK  300
SLIAWPIKSY HESFGAAGPP GALVRLVKDG SMRLAAPSGH LRLLSCSLQM GKNANFTKKF  360
VIYAKRLSGL EEALRIKRER ELRGSTTATR RPPLRRGRVS QRLPVPDDIP KPPYVGSREL  420
PGISPEHQIH DAEGIARMRA ACELAARVVD YAGTLVRPSV TTNEIDKAVH QMIIDAGAYP  480
SPLGYGGFPK SVCTSVNECM CHGIPDSRQL QNGDIINIDV TVYLNGYHGD TSKTFFCGDV  540
SESIKRLVKV TEECLHYGIA LCRDGALYRK IGKRISEHAE KFGYGVVDRF VGHGIGTVFH  600
SEPLIFHHRN DKSGSMVEGQ TFTIEPILTL GSTECVTWED NWTTLTADGS PAAQFEHTIL  660
ITKTGAEILT TY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2g6p_A4e-8040467018292Methionine aminopeptidase 1
4fli_A4e-8040467019293Methionine aminopeptidase 1
4flj_A4e-8040467019293Methionine aminopeptidase 1
4flk_A4e-8040467019293Methionine aminopeptidase 1
4fll_A4e-8040467019293Methionine aminopeptidase 1
4hxx_A4e-8040467018292Methionine aminopeptidase 1
4u1b_A4e-8040467018292Methionine aminopeptidase 1
4u69_A4e-8040467018292Methionine aminopeptidase 1
4u6c_A4e-8040467018292Methionine aminopeptidase 1
4u6e_A4e-8040467018292Methionine aminopeptidase 1
4u6j_A4e-8040467018292Methionine aminopeptidase 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-171HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7GDP50.0A0A3Q7GDP5_SOLLC; Methionine aminopeptidase
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA321822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-65related to ABI3/VP1 1