PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03663.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 417aa    MW: 47166.6 Da    PI: 5.0395
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03663.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox542.9e-17217269456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              ++++ ++q+e Le+ Fe ++++  e++ +LAk++gL+ rqV +WFqNrRa++k
  Sme2.5_03663.1_g00007.1 217 KRRLLPKQVEFLEKSFEVENKLEPERKVQLAKEIGLQPRQVAIWFQNRRARYK 269
                              4467799*********************************************9 PP
2HD-ZIP_I/II122.91.6e-39215306192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl  +qv++LE+sFe e+kLeperKv+la+e+glqprqva+WFqnrRAR+ktkqlEkdy++Lk+++d+lk++ + L ke+e+
  Sme2.5_03663.1_g00007.1 215 EKKRRLLPKQVEFLEKSFEVENKLEPERKVQLAKEIGLQPRQVAIWFQNRRARYKTKQLEKDYDVLKTSFDKLKTQYDCLFKENES 300
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              Lr+e++
  Sme2.5_03663.1_g00007.1 301 LRNEVH 306
                              **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-17203273IPR009057Homeodomain-like
PROSITE profilePS5007116.892211271IPR001356Homeobox domain
SMARTSM003896.5E-17214275IPR001356Homeobox domain
CDDcd000867.97E-16216272No hitNo description
PfamPF000461.3E-14217269IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-19219278IPR009057Homeodomain-like
PRINTSPR000311.9E-5242251IPR000047Helix-turn-helix motif
PROSITE patternPS000270246269IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5251267IPR000047Helix-turn-helix motif
PfamPF021835.5E-17271312IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MYPVTWVVVD KESKHTWSWF IKCIKHDLEF TQTESEGLTV MFDMQKKNGS TTETSTAETG  60
AATIEMHTTA STASTSVTVG VEVTITISAA AESATTYECT ANVENVYQLT SQFSSQQSTT  120
GFGGLKRKSN TAMEVASVYE GSNMISNNGF LIPNEVLPPN WVSNSSPIFH GSASMVNFNQ  180
SRGQKGKKRS IVAQLDKEEN SSNEVNYDVC FHQTEKKRRL LPKQVEFLEK SFEVENKLEP  240
ERKVQLAKEI GLQPRQVAIW FQNRRARYKT KQLEKDYDVL KTSFDKLKTQ YDCLFKENES  300
LRNEVHLLKE KLMNGKQNSQ GISPVDAQVQ TSNLVCKQED AKSDILDSDS PHFTCTSFLE  360
PADSSHLFET EASDFSQEDD SRTLLPPLCF PKLEEDLPVN SCNFGFQMED QSWFSHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263271RRARYKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-101HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594284.11e-144PREDICTED: homeobox-leucine zipper protein ATHB-54-like
RefseqXP_016474071.11e-144PREDICTED: homeobox-leucine zipper protein ATHB-54-like
TrEMBLA0A1S4ABT71e-143A0A1S4ABT7_TOBAC; homeobox-leucine zipper protein ATHB-54-like
STRINGXP_009594284.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-43homeobox 1