PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03789.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 30688.8 Da    PI: 7.4514
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03789.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k ien  nrqvtfskRr+g+lKKA+ELSvLCd evaviifsstgkl+e+ss
  Sme2.5_03789.1_g00003.1  9 KLIENVNNRQVTFSKRRAGLLKKASELSVLCDSEVAVIIFSSTGKLFEFSS 59
                             569**********************************************96 PP
2K-box56.11.6e-19105189488
                    K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                              +s++++++++ ++ q+e++ Lk+e+++L+++q +llG+dL+ + l+eL+ Le+qL+++l  i+++K+ell++q+e+++k+ +el+
  Sme2.5_03789.1_g00003.1 105 QSQSQQQTHELKQEQKEVDSLKDELSKLKTKQLRLLGKDLNGMGLNELRLLEHQLNEGLLGIKERKEELLIQQLEYSRKQVEELR 189
                              4444488889999*******************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002655.70E-36290No hitNo description
SuperFamilySSF554559.94E-29284IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-13110188IPR002487Transcription factor, K-box
PROSITE profilePS5129710.657115201IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KASELSVLCD SEVAVIIFSS TGKLFEFSST  60
SLKCNAAQDK IKLSYSMKQT LSRYNRCVAS TETSAAEKKS EDKEQSQSQQ QTHELKQEQK  120
EVDSLKDELS KLKTKQLRLL GKDLNGMGLN ELRLLEHQLN EGLLGIKERK EELLIQQLEY  180
SRKQVEELRG LFPLSASLPP PYLEFHHPME KKYPILKVSE ESLDSDTACE DGVDDEDSNT  240
TLQLGLPTIG RKRKKAEQES PSSNSENQVG SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-21176170MEF2C
5f28_B8e-21176170MEF2C
5f28_C8e-21176170MEF2C
5f28_D8e-21176170MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249255GRKRKKA
2250254RKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142201e-115BT014220.1 Lycopersicon esculentum clone 133400R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538893.11e-160PREDICTED: agamous-like MADS-box protein AGL15
TrEMBLA0A2G2XQH51e-163A0A2G2XQH5_CAPBA; Uncharacterized protein
STRINGSolyc01g087990.2.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-54AGAMOUS-like 15