PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03790.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARR-B
Protein Properties Length: 717aa    MW: 78785.1 Da    PI: 6.3181
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03790.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like781.2e-24207256151
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                              kpr++W+ eLH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQ
  Sme2.5_03790.1_g00001.1 207 KPRVVWSIELHKKFVTAVHQL-GLEKAVPKRILDLMNVEGLTRENVASHLQ 256
                              79*******************.***************************** PP
2Response_reg79.61e-26261341109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl vdD+p+ ++ll  +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++
  Sme2.5_03790.1_g00001.1  26 VLAVDDDPICLKLLDGLLRKCQY-HVTTTSQARTALAMLRENKyrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDSK 109
                              799********************.***************999989*******************87754.558************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++ + +  Ga d+l+Kp+  eel +
  Sme2.5_03790.1_g00001.1 110 LVMKGITHGACDYLVKPVRLEELKN 134
                              **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1531712IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.2E-4323157No hitNo description
SuperFamilySSF521724.41E-3623155IPR011006CheY-like superfamily
SMARTSM004482.6E-3224136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.53325140IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-2426134IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.89E-2827140No hitNo description
Gene3DG3DSA:1.10.10.602.0E-24204256IPR009057Homeodomain-like
PROSITE profilePS512949.508204263IPR017930Myb domain
SuperFamilySSF466895.2E-15204257IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-21207257IPR006447Myb domain, plants
PfamPF002495.7E-6209256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MTVEEIRGNM SGERESFDDF PVGMRVLAVD DDPICLKLLD GLLRKCQYHV TTTSQARTAL  60
AMLRENKYRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDSKL VMKGITHGAC  120
DYLVKPVRLE ELKNIWQHVI RRKKVEPKNH KSNDQDKAHQ GGGEGERGSH LSGNADQNRK  180
VNKKRKDEEY ESDENGNDNE DPATQKKPRV VWSIELHKKF VTAVHQLGLE KAVPKRILDL  240
MNVEGLTREN VASHLQALIS LLFIIPYKYR LFLKRINSQD AQQANMVAAA LGAKDSAYMR  300
MSSLDGLGGF RTLAGSGRFG QASLSSSYAS GGMLGRLNSP AGVSLRNLAS SPILQPNHGQ  360
NLSNTSINAL MKLNPNVPPA SQNANLFQGI PASLEFDQLQ QSKYATRMGE LNPLNESGLH  420
TAASTFTNSG LIGSTNSSMP NVSNNPILLP MNSQQPLTGV GFGNQTSLNI ASFSSEAFNT  480
GVTGSSNFLD HDRYNENWQT TIQPLKFQSS SFPLAEPFSN SHLPQDRVRD NDTSTGSHLQ  540
NNPVDFSTST IVSLPFEASS GETQCRENLG GDAQIMNQTT CQQWPDQNQH YSHNSNNMFG  600
NVSSQVSSNS GMASLTHPMD QNKDMLCRSV EMSLTGRSNG GSSTHIPHSE SEKLTHDSRT  660
RTNEDYLFPT TKQQVGLLPQ GYGSLDDLMS AMKREQDGAM LEAGDFGFDA YSLGSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-20205277364ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350077.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLM1AD550.0M1AD55_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000202330.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-127response regulator 12