PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03806.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 138aa MW: 15624.2 Da PI: 6.952

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03806.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	26	48	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Sme2.5_03806.1_g00009.1 26 YECVFCKRGFNTAQALGGHMNIH 48 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.4E-4	23	52	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.66E-6	24	53	No hit	No description
PROSITE profile	PS50157	10.616	26	53	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.0E-5	26	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MKNSSTHDDE VDHHPKHQEN GIGRSYECVF CKRGFNTAQA LGGHMNIHRK DRIRTNRSSQ 60 NNGPYHVPTT HISYRSFLPA RSSTSTAGSL LMNGPDGDNN NRAQCLNLLL QQFGETMEKN 120 KEILEDDLDL ELRLGYDP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015166047.1	7e-59	PREDICTED: zinc finger protein 8-like
TrEMBL	M1D3U8	1e-57	M1D3U8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400080694	2e-58	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2136	21	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	6e-14	C2H2 family protein