PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03858.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 146aa MW: 16678.2 Da PI: 6.2726

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03858.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.6	1.9e-09	4	26	19	41
HHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 19 gilKKAeELSvLCdaevaviifs 41 + KKA+ELS+LC++++a++ifs Sme2.5_03858.1_g00005.1 4 SLSKKANELSILCGVKIAILIFS 26 678*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.288	1	38	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.6E-9	3	32	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.71E-11	3	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MLKSLSKKAN ELSILCGVKI AILIFSIGSQ PFLFGNPHVE SVVHDFLEAN QPTVPSYYMG 60 RKKKIEENED KGKSVKGNFK YRLSEDFKLT NAERLEKLNQ EIKKLEDQLN EEIDFLQNMF 120 GFEDPKPMLE MNVASSSTIP AHWLSP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015160190.1	5e-68	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	M1DEI3	1e-66	M1DEI3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400087767	2e-67	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	4e-10	AGAMOUS-like 61