PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03882.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 507aa MW: 58198.4 Da PI: 8.8128

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03882.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.8e-07	78	112	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 r +WT+ E++++++a +++ + Wk+I + +g +t Sme2.5_03882.1_g00002.1 78 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTV 112 789***************77.*******.8885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-9	66	114	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-9	76	113	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-5	78	112	IPR001005	SANT/Myb domain
CDD	cd00167	0.00312	80	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MLCWQIPDEQ PKTSHEPKPT NISFYLNWMV MALPNLGSFS NPTATASAAV TPSTSNPLSP 60 TDDPSKKIRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFVGSK TVIQEGELSC 120 LCPPLPESPT LSLKIYFNAG FKSLMSQGGY LETQIWYEWV EINRKRIRRT TMSSKCLEWV 180 SFILNEAFGD KANWPMGWRL SEQDGKHFCN RKQNRYGSGG NPFHLWSQKN VQEIGDFFGG 240 GMATEEKSEL KNPVKWARFL VKNDGTNMPR EITLLVEGSS TTSPIWLEKI EIAKSPIRNI 300 TIVNVVEAVD VGFSQNLLAT KKMQKGIIEG NLKDGENFAE VDNQETITTV DNSRAMKKKK 360 PWRYFYKSRV VDMPERWRQI VSAGLVSGSP SEHYGVNCKD TSEFSDLLED LKLIDLQQQD 420 WKFTWFKGDN LDIASRIDRR YFRFENLLLG TPSLKDIIKD WWSSFIFSGK PDYVLACKLK 480 AVKCKIKEWS RTVEGNLKIQ RETGKDS

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MLCWQIPDEQ PKTSHEPKPT NISFYLNWMV MALPNLGSFS NPTATASAAV TPSTSNPLSP  60
TDDPSKKIRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFVGSK TVIQEGELSC  120
LCPPLPESPT LSLKIYFNAG FKSLMSQGGY LETQIWYEWV EINRKRIRRT TMSSKCLEWV  180
SFILNEAFGD KANWPMGWRL SEQDGKHFCN RKQNRYGSGG NPFHLWSQKN VQEIGDFFGG  240
GMATEEKSEL KNPVKWARFL VKNDGTNMPR EITLLVEGSS TTSPIWLEKI EIAKSPIRNI  300
TIVNVVEAVD VGFSQNLLAT KKMQKGIIEG NLKDGENFAE VDNQETITTV DNSRAMKKKK  360
PWRYFYKSRV VDMPERWRQI VSAGLVSGSP SEHYGVNCKD TSEFSDLLED LKLIDLQQQD  420
WKFTWFKGDN LDIASRIDRR YFRFENLLLG TPSLKDIIKD WWSSFIFSGK PDYVLACKLK  480
AVKCKIKEWS RTVEGNLKIQ RETGKDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-100	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	7e-27	MYB_related family protein