PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04032.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 342aa    MW: 38832.8 Da    PI: 6.922
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04032.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.23.3e-29120207291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H
  Sme2.5_04032.1_g00008.1 120 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHSH 203
                              ******************************************9988..9************************************* PP

                     FAR1  88 elap 91 
                              +l+p
  Sme2.5_04032.1_g00008.1 204 PLCP 207
                              **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-26120207IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
ESAGSLNVSS KICSLFDVGI DPFWEITDSF DATVDFVVDD HVSGGEEEGT VVELRAVDEN  60
AIGGSSSEEA FHQVHNVKVD QELPEREGLL LEEAQSLDNS TSDEPYVGLE FESEAAAHAF  120
YNAYATRVGF IIRVSKLSRS RRDGSAIGRA LVCNKEGFRM PDKREKIVRQ RAETRVGCRA  180
MILVRKISSG KWVVTKFVKE HSHPLCPGKG RRDLIYDQYP STFSLLSSQR QHQLNITLLL  240
FKLSTVTMTC LFRCLPIGQP VTYAVGKWYK GTKDSFISNE HDKIRELSQQ LAAEKKRSAT  300
YKRHLEMIFE HIEEHNQSLS KKIQDIVHNV RELESRDQHH HR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164249.11e-128PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLM1CKJ51e-126M1CKJ5_SOLTU; Uncharacterized protein
TrEMBLM1CKJ61e-127M1CKJ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000694951e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115682325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.26e-80FAR1 family protein