PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04124.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 179aa    MW: 19920.9 Da    PI: 4.6474
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04124.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.52.3e-43271261100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q
  Sme2.5_04124.1_g00010.1  27 PCAACKILRRRCAEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQ 112
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++l+ae a++++e
  Sme2.5_04124.1_g00010.1 113 ISELQAEFAKAQAE 126
                              **********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.55926127IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4327124IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MECSDYKSTC TISSSSLSTP PMVVLSPCAA CKILRRRCAE KCVLAPYFPP TDPIKFTIAH  60
RVFGASNIIK MLQELPEEQR ADAVNSMVYE ANARIRDPVY GCAGAICQLQ KQISELQAEF  120
AKAQAEILNL KCQNSNLLAL VCMEVSQNST TNINDYENND ISMLLEDNNV YAAWEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-432613210116LOB family transfactor Ramosa2.1
5ly0_B2e-432613210116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754447e-86HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553034.11e-103PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-76LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1U8F9W31e-102A0A1U8F9W3_CAPAN; LOB domain-containing protein 1-like
STRINGSolyc05g048740.2.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-74LOB domain-containing protein 1