PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04165.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 265aa    MW: 30228.2 Da    PI: 6.5872
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04165.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.5e-161742511294
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               ++ +++pk+fa++ ++   e+k ++l +e+g++W vk+  + ++ ++ +++GW +F ++n+L  g+ + Fkl++   ++ v+
  Sme2.5_04165.1_g00003.1 174 HTNFMTIPKRFAARTKIF--EQKNMRLVNEEGKEWGVKI--EYNRHTIHIKRGWAKFRRENKLAIGEACRFKLIQG-HATNVL 251
                              45679*******999766..4558***************..66666688************************984.333344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-18160252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-19162252IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.971163257IPR003340B3 DNA binding domain
CDDcd100176.05E-14164254No hitNo description
SMARTSM010196.8E-13166257IPR003340B3 DNA binding domain
PfamPF023621.5E-14173253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MLLVSLLTVY AHFALAKVCK SSLVSCKQTI EFQKVVETEY PIEADGSLVI LDHSTENLRH  60
GPLAEMRKRK RQGDGAEGIP INIQTNATIM KEEENDIAVN IQIHANVTEE EDDDILVNPQ  120
TNANIIEVEE SHDKDVGKNN SGSEEDAPNY SSRHSLVNFD CDDPYFEIVI KKSHTNFMTI  180
PKRFAARTKI FEQKNMRLVN EEGKEWGVKI EYNRHTIHIK RGWAKFRREN KLAIGEACRF  240
KLIQGHATNV LQVHKIPTPG SLQYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.12e-65PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM1DLV31e-70M1DLV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000910922e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-10B3 family protein