PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04219.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 187aa    MW: 19870.1 Da    PI: 4.4283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04219.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36e-162370355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+ +l+g
  Sme2.5_04219.1_g00003.1 23 FRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAMALKG 70
                             89**9.55.6*********843...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-272284IPR001471AP2/ERF domain
PROSITE profilePS5103219.442278IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-262279IPR001471AP2/ERF domain
CDDcd000181.18E-152380No hitNo description
SuperFamilySSF541717.85E-182380IPR016177DNA-binding domain
PfamPF008471.5E-92370IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSSTSSGGPG SPSRPMGGKH AVFRGIRCRS GKWVSEIREP RKTTRIWLGT YPTPEMAAAA  60
YDVAAMALKG NDAVINFPEN INSYPSLSPS PAAADIRKAA ATAAALMKIE TGETTSGTQP  120
GGIDDQSSGS VHMETEDHEY IDEEALFDMP NLLVDMAEGM MVSPPRMNSP PSDDSPGNSD  180
AESLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-151482676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108111e-118AP010811.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0019O09, complete sequence.
GenBankHG9755201e-118HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358864.23e-94PREDICTED: ethylene-responsive transcription factor ERF027-like
RefseqXP_016567672.14e-94PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ907e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1U8G8L99e-93A0A1U8G8L9_CAPAN; ethylene-responsive transcription factor ERF027-like
TrEMBLM1C2X77e-93M1C2X7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000585871e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-37ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]