PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04243.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C3H

Protein Properties

Length: 238aa MW: 25874.7 Da PI: 5.2702

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04243.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.2	4.9e-12	192	216	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ Sme2.5_04243.1_g00003.1 192 GEKDCAHYMQTRTCKFGDSCKFDHP 216 7889********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0013	190	217	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.742	190	218	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	191	217	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-9	192	216	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-5	196	215	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDEVVGALGD GLERGGMSCR KGERDGWKWK IGGAVAVGWG EDVQWNLYWE MANQLCYNPS 60 STAGVAGGSL ARTTRSMDDY LSTDNTLLTS SSYFGSSGYS SYLTDSYTPT ASRIPGYSSY 120 GPPGVDVTPP IAADSYFSSL KRSSYDALYH QTLLGAHNTI GQAEAWFSAN PLAKRPRFES 180 ASNLSIYPQR PGEKDCAHYM QTRTCKFGDS CKFDHPIWVP EGGIPQISFA ITLVAPPE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	1e-112	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006344928.1	5e-98	PREDICTED: zinc finger CCCH domain-containing protein 37-like
TrEMBL	A0A0V0IBX2	2e-95	A0A0V0IBX2_SOLCH; Putative zinc finger CCCH domain-containing protein 37-like
STRING	Solyc12g017410.1.1	2e-91	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10640	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	9e-42	floral homeotic protein (HUA1)