PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04284.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24263.8 Da    PI: 9.6546
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04284.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1882135356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k+ ++tkeq + Le+ F+ + ++   +++eLA+kl+L+ rqV vWFqNrRa+ k
  Sme2.5_04284.1_g00009.1  82 KKLRLTKEQSTLLEDSFKHHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 135
                              56689***********************************************98 PP
2HD-ZIP_I/II116.12e-3782168288
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kk+rl+keq++lLE+sF+++++L   +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL
  Sme2.5_04284.1_g00009.1  82 KKLRLTKEQSTLLEDSFKHHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCQSLNDENNRLKKELQEL 167
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 r 88 
                              r
  Sme2.5_04284.1_g00009.1 168 R 168
                              8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-1763136IPR009057Homeodomain-like
PROSITE profilePS5007115.82377137IPR001356Homeobox domain
SMARTSM003897.1E-1579141IPR001356Homeobox domain
SuperFamilySSF466893.08E-1781145IPR009057Homeodomain-like
CDDcd000862.93E-1382138No hitNo description
PfamPF000466.9E-1683135IPR001356Homeobox domain
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
SMARTSM003403.1E-17137180IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-9137168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MLPNKYDSDS SMGNDGNEAC DTRLTLGLAT SDHHKNVTCL DLSIVPLHFS DHGTNKINGS  60
SSKTCKSCSK FNSENKKIGM SKKLRLTKEQ STLLEDSFKH HTTLAMGQKQ ELAAKLKLKP  120
RQVEVWFQNR RARTKLKQTE VDCEFLKKWC QSLNDENNRL KKELQELRPI KIDQQAMPFY  180
LSKTRTLILC SSCQKILRDY TKEKHETGPE SG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754463e-67HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774347.11e-114homeobox-leucine zipper protein HAT22-like
SwissprotP466045e-45HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLM1DZM31e-118M1DZM3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000969701e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.17e-43HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]