PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04383.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 301aa    MW: 33641.7 Da    PI: 7.1886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04383.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-1288139155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  Sme2.5_04383.1_g00001.1  88 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 139
                              79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.57E-1086143No hitNo description
SuperFamilySSF474591.96E-1686163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1287143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.72387138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-988139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-893144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSFTSLLDSS NNNNREESSS SPVLMYNNNA REYNTWDPNS SLEDHQLFME GSPPAELPAA  60
AIRSAATSGR RKRRRTRSCK NKEELENQRM THIAVERNRR KQMNEYLAVI RSLMPPSYVQ  120
RGDQASIIGG AINFVKELEH HLQTLEAQKR IHSQKQEQHS DHHHGSSSNP LFADYFSFPQ  180
YSTHSKSTSP AAVAAAESCD SPPATEKMSA LADIEVSMAE SHANLKILSK RRPKQLLKIV  240
AGLQCLWLTV LHLNVTTVDH MVLYSLSLKL EEGCQLSTAD EIADSVNQLL ARIQEEAASS  300
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17074RKRRR
27075RKRRRT
38899RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-138HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072168.10.0transcription factor bHLH94-like
SwissprotQ9C7T42e-84BH096_ARATH; Transcription factor bHLH96
TrEMBLM0ZPW71e-180M0ZPW7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000054461e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]