PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04422.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 135aa    MW: 15872.8 Da    PI: 6.0248
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04422.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52e-1225961590
                             -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                              l +p +f++++ ++   ++  +++ + g+ W+vk+  + + +++++++ Wk+F+ +++ + g+ ++F++dgr++f
  Sme2.5_04422.1_g00005.1 25 ELKIPSEFLKHITEE--AKISAVVKGPCGNGWDVKI--EERENGMFFGDYWKSFAMEQHFDGGELLLFHYDGRKTF 96
                             589******777644..5678***************..9********************************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-131097IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.4611104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-121397IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.007814107IPR003340B3 DNA binding domain
PfamPF023624.6E-102496IPR003340B3 DNA binding domain
CDDcd100171.98E-72695No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSNSEANGDD SLYFYKIVLD PEMEELKIPS EFLKHITEEA KISAVVKGPC GNGWDVKIEE  60
RENGMFFGDY WKSFAMEQHF DGGELLLFHY DGRKTFHEPR TEKRPHHCLE AIKFSTERLL  120
RNFSHEPLTE KRSHH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556707.13e-36PREDICTED: putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1U8FBJ47e-35A0A1U8FBJ4_CAPAN; putative B3 domain-containing protein Os04g0347400
STRINGXP_009613235.12e-27(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-10B3 family protein